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publications
A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes
Published in Microbiome, 2020
Metagenome-assembled genomes of sponge symbionts off the coast of Guam.
Recommended citation: Podell, S., Blanton, J.M., Oliver, A. et al. A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes. Microbiome (2020).
Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom
Published in Scientific Reports, 2021
The genome assembly and gene annotation of an industially-relevant diatom.
Recommended citation: Oliver, A., Podell, S., Pinowska, A. et al. Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom. Scientific Reports (2021).
Phenotypic and transcriptional response of Daphnia pulicaria to the combined effects of temperature and predation
Published in PLoS ONE, 2022
Life history changes and differential gene expression of water fleas in response to high temperatures and presence of predators.
Recommended citation: Oliver, A., Cavalheri, H.B., Lima, T.G. et al. Phenotypic and transcriptional response of Daphnia pulicaria to the combined effects of temperature and predation. PLoS ONE (2022).
Herbivorous fish microbiome adaptations to sulfated dietary polysaccharides
Published in Applied and Environmental Microbiology, 2023
Metagenomic exploration of the enzymes within herbivorous fish guts.
Recommended citation: Podell, S., Oliver, A., Wegley Kelly, L. et al. Herbivorous fish microbiome adaptations to sulfated dietary polysaccharides. Applied and Environmental Microbiology (2023).
Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish
Published in mBio, 2024
Genomic investigations of gut symbionts that unlock algal nutrients for fish.
Recommended citation: Oliver, A., Podell, S., Wegley Kelly, L. et al. Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish. mBio (2024).
talks
teaching
Mathematics for Algorithms and Systems
Undergraduate course, UC San Diego, Jacobs School of Engineering, 2020
Four quarters as a tutor-reader under Distinguished Prof. Andrew B. Kahng and Prof. Miles Jones.
Discrete Mathematics
Undergraduate course, UC San Diego, Jacobs School of Engineering, 2020
One quarter as a tutor-reader under Prof. Miles Jones.
Design and Analysis of Algorithms
Undergraduate course, UC San Diego, Jacobs School of Engineering, 2021
One quarter as a tutor-reader under Prof. Miles Jones.